Index

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Identifier Index
`__add__`	Method in class `UserList.UserList`
`__cmp__`	Method in class `UserList.UserList`
`__contains__`	Method in class `UserList.UserList`
`__del__`	Method in class `Dacapo.NetCDF.File`
`__del__`	Method in class `Dacapo.dacapo.Dacapo`
`__del__`	Method in class `Dacapo.dacapo_new.Dacapo`
`__delattr__`	Method in class `Dacapo.NetCDF.Collection`
`__delattr__`	Method in class `Dacapo.NetCDF.Entry`
`__delattr__`	Method in class `Simulations.Dacapo.NetCDF.Entry`
`__delitem__`	Method in class `UserList.UserList`
`__delslice__`	Method in class `UserList.UserList`
`__eq__`	Method in class `UserList.UserList`
`__ge__`	Method in class `UserList.UserList`
`__getinitargs__`	Method in class `Dacapo.Simulation.Simulation`
`__getitem__`	Method in class `UserList.UserList`
`__getitem__`	Method in class `exceptions.Exception`
`__getslice__`	Method in class `UserList.UserList`
`__getstate__`	Method in class `Dacapo.Simulation.Simulation`
`__getstate__`	Method in class `Patterns.ObserverPattern.Subject`
`__gt__`	Method in class `UserList.UserList`
`__iadd__`	Method in class `UserList.UserList`
`__imul__`	Method in class `UserList.UserList`
`__init__`	Method in class `Dacapo.AtomProjectedDOS.AtomProjectedDOS`
`__init__`	Method in class `Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`__init__`	Method in class `Dacapo.DacapoWannier.DacapoWannier`
`__init__`	Method in class `Dacapo.JobTypes.JobType`
`__init__`	Method in class `Dacapo.MultiCenterProjectedDOS.MultiCenterProjectedDOS`
`__init__`	Method in class `Dacapo.MultiCenterProjectedDOS.MultiCenterProjectedDOSTool`
`__init__`	Method in class `Dacapo.NetCDF.Dimension`
`__init__`	Method in class `Dacapo.NetCDF.Entry`
`__init__`	Method in class `Dacapo.NetCDF.File`
`__init__`	Method in class `Dacapo.NetCDF.Series`
`__init__`	Method in class `Dacapo.Simulation.Simulation`
`__init__`	Method in class `Dacapo.dacapo.Dacapo`
`__init__`	Method in class `Dacapo.dacapo_new.Dacapo`
`__init__`	Method in class `Dacapo.ll.Dacapo`
`__init__`	Method in class `Patterns.ObserverPattern.Subject`
`__init__`	Method in class `Simulations.Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`__init__`	Method in class `Simulations.Dacapo.NetCDF.Entry`
`__init__`	Method in class `UserList.UserList`
`__init__`	Method in class `exceptions.EnvironmentError`
`__init__`	Method in class `exceptions.Exception`
`__le__`	Method in class `UserList.UserList`
`__len__`	Method in class `UserList.UserList`
`__lt__`	Method in class `UserList.UserList`
`__mul__`	Method in class `UserList.UserList`
`__ne__`	Method in class `UserList.UserList`
`__radd__`	Method in class `UserList.UserList`
`__repr__`	Method in class `Dacapo.MultiCenterProjectedDOS.MultiCenterProjectedDOS`
`__repr__`	Method in class `Dacapo.NetCDF.Entry`
`__repr__`	Method in class `Dacapo.NetCDF.EntryWithStaticName`
`__repr__`	Method in class `Dacapo.Simulation.Simulation`
`__repr__`	Method in class `Patterns.ObserverPattern.Subject`
`__repr__`	Method in class `Simulations.Dacapo.NetCDF.Entry`
`__repr__`	Method in class `Simulations.Dacapo.NetCDF.EntryWithStaticName`
`__repr__`	Method in class `UserList.UserList`
`__setattr__`	Method in class `Dacapo.NetCDF.Collection`
`__setattr__`	Method in class `Dacapo.NetCDF.Entry`
`__setattr__`	Method in class `Simulations.Dacapo.NetCDF.Entry`
`__setitem__`	Method in class `UserList.UserList`
`__setslice__`	Method in class `UserList.UserList`
`__setstate__`	Method in class `Dacapo.Simulation.Simulation`
`__setstate__`	Method in class `Patterns.ObserverPattern.Subject`
`__str__`	Method in class `Dacapo.JobTypes.JobType`
`__str__`	Method in class `Dacapo.NetCDF.Entry`
`__str__`	Method in class `Dacapo.NetCDF.File`
`__str__`	Method in class `Dacapo.Simulation.Simulation`
`__str__`	Method in class `Simulations.Dacapo.NetCDF.Entry`
`__str__`	Method in class `exceptions.EnvironmentError`
`__str__`	Method in class `exceptions.Exception`
`Acquire`	Method in class `Patterns.ObserverPattern.Subject`
`add`	Method in class `Dacapo.MultiCenterProjectedDOS.MultiCenterProjectedDOS`
`append`	Method in class `UserList.UserList`
`AtomProjectedDOS`	Module in package `Dacapo`
`AtomProjectedDOS`	Class in module `Dacapo.AtomProjectedDOS`
`AtomProjectedDOSTool`	Class in module `Dacapo.AtomProjectedDOS`
`AtomProjectedDOSTool`	Class in module `Simulations.Dacapo.AtomProjectedDOS`
`AtomsHasChanged`	Method in class `Dacapo.dacapo.Dacapo`
`BundleOff`	Method in class `Patterns.ObserverPattern.Subject`
`BundleOn`	Method in class `Patterns.ObserverPattern.Subject`
`Calculate`	Method in class `Dacapo.dacapo.Dacapo`
`Calculate`	Method in class `Dacapo.dacapo_new.Dacapo`
`Calculate`	Method in class `Dacapo.ll.Dacapo`
`CalculateAtomicDOS`	Method in class `Dacapo.dacapo.Dacapo`
`CalculateAtomicDOS`	Method in class `Dacapo.dacapo_new.Dacapo`
`CalculateAtomicDOS`	Method in class `Dacapo.ll.Dacapo`
`CalculateStress`	Method in class `Dacapo.dacapo.Dacapo`
`CalculateStress`	Method in class `Dacapo.dacapo_new.Dacapo`
`CalculateStress`	Method in class `Dacapo.ll.Dacapo`
`Collection`	Class in module `Dacapo.NetCDF`
`count`	Method in class `UserList.UserList`
`Dacapo`	Package
`dacapo`	Module in package `Dacapo`
`Dacapo`	Class in module `Dacapo.dacapo`
`Dacapo`	Class in module `Dacapo.dacapo_new`
`Dacapo`	Class in module `Dacapo.ll`
`dacapo_new`	Module in package `Dacapo`
`DacapoError`	Class in module `Dacapo.Simulation`
`DacapoWannier`	Module in package `Dacapo`
`DacapoWannier`	Class in module `Dacapo.DacapoWannier`
`Dagger`	Function in module `Dacapo.DacapoWannier`
`Default`	Variable in module `Dacapo.JobTypes`
`DefaultASCIIFileName`	Function in module `Dacapo.Simulation`
`DefaultFileName`	Function in module `Dacapo.Simulation`
`DefaultOutFileName`	Function in module `Dacapo.Simulation`
`defaultpseudopotentials`	Variable in module `Dacapo.PseudoPotentials`
`DeleteNetCDFEntry`	Method in class `Dacapo.NetCDF.Collection`
`DeleteNetCDFEntry`	Method in class `Dacapo.dacapo.Dacapo`
`DeleteNetCDFEntry`	Method in class `Dacapo.dacapo_new.Dacapo`
`Dimension`	Class in module `Dacapo.NetCDF`
`DipoleCorrection`	Method in class `Dacapo.dacapo.Dacapo`
`DipoleCorrection`	Method in class `Dacapo.dacapo_new.Dacapo`
`DipoleCorrection`	Method in class `Dacapo.ll.Dacapo`
`Entry`	Class in module `Dacapo.NetCDF`
`Entry`	Class in module `Simulations.Dacapo.NetCDF`
`EntryWithStaticName`	Class in module `Dacapo.NetCDF`
`EntryWithStaticName`	Class in module `Simulations.Dacapo.NetCDF`
`EnvironmentError`	Class in module `exceptions`
`Exception`	Class in module `exceptions`
`Execute`	Method in class `Dacapo.Simulation.Simulation`
`ExecuteExternalDynamics`	Method in class `Dacapo.Simulation.Simulation`
`extend`	Method in class `UserList.UserList`
`File`	Class in module `Dacapo.NetCDF`
`GetAsciiFile`	Method in class `Dacapo.JobTypes.JobType`
`GetAtomsCounter`	Method in class `Dacapo.dacapo.Dacapo`
`GetAtomsCounter`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetAtomsCounter`	Method in class `Dacapo.ll.Dacapo`
`GetAttributes`	Method in class `Dacapo.NetCDF.Entry`
`GetAttributes`	Method in class `Simulations.Dacapo.NetCDF.Entry`
`GetAttrName`	Method in class `Dacapo.dacapo.Dacapo`
`GetAttrName`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetAttrName`	Method in class `Dacapo.ll.Dacapo`
`GetBandMoment`	Method in class `Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`GetBandMoment`	Method in class `Simulations.Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`GetBZKPoints`	Method in class `Dacapo.dacapo.Dacapo`
`GetBZKPoints`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetBZKPoints`	Method in class `Dacapo.ll.Dacapo`
`GetCartesianForces`	Method in class `Dacapo.dacapo.Dacapo`
`GetCartesianForces`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetCartesianForces`	Method in class `Dacapo.ll.Dacapo`
`GetChargeMixing`	Method in class `Dacapo.dacapo.Dacapo`
`GetCutoff`	Method in class `Dacapo.MultiCenterProjectedDOS.MultiCenterProjectedDOSTool`
`GetData`	Method in class `Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`GetData`	Method in class `Simulations.Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`GetDensityArray`	Method in class `Dacapo.dacapo.Dacapo`
`GetDensityArray`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetDensityArray`	Method in class `Dacapo.ll.Dacapo`
`GetDensityCutoff`	Method in class `Dacapo.dacapo.Dacapo`
`GetDescription`	Method in class `Dacapo.MultiCenterProjectedDOS.MultiCenterProjectedDOSTool`
`GetDimensionNames`	Method in class `Dacapo.NetCDF.Entry`
`GetDimensionNames`	Method in class `Simulations.Dacapo.NetCDF.Entry`
`GetDimensions`	Method in class `Dacapo.NetCDF.Entry`
`GetDimensions`	Method in class `Simulations.Dacapo.NetCDF.Entry`
`GetDirections`	Method in class `Dacapo.DacapoWannier.DacapoWannier`
`GetDOS`	Method in class `Dacapo.AtomProjectedDOS.AtomProjectedDOS`
`GetEFermi`	Method in class `Dacapo.AtomProjectedDOS.AtomProjectedDOS`
`GetEFermi`	Method in class `Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`GetEFermi`	Method in class `Dacapo.MultiCenterProjectedDOS.MultiCenterProjectedDOS`
`GetEFermi`	Method in class `Dacapo.MultiCenterProjectedDOS.MultiCenterProjectedDOSTool`
`GetEFermi`	Method in class `Simulations.Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`GetEigenvalues`	Method in class `Dacapo.dacapo.Dacapo`
`GetEigenvalues`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetEigenvalues`	Method in class `Dacapo.ll.Dacapo`
`GetEigenvalueSolver`	Method in class `Dacapo.dacapo.Dacapo`
`GetElectronicTemperature`	Method in class `Dacapo.dacapo.Dacapo`
`GetElectrostaticPotential`	Method in class `Dacapo.dacapo.Dacapo`
`GetExecutable`	Method in class `Dacapo.JobTypes.JobType`
`GetExecuteMethod`	Method in class `Dacapo.Simulation.Simulation`
`GetFermilevel`	Method in class `Dacapo.dacapo.Dacapo`
`GetFFTIndex`	Method in class `Dacapo.DacapoWannier.DacapoWannier`
`GetGGList`	Method in class `Dacapo.DacapoWannier.DacapoWannier`
`GetGracePlot`	Method in class `Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`GetGracePlot`	Method in class `Simulations.Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`GetGridDimensions`	Method in class `Dacapo.DacapoWannier.DacapoWannier`
`GetHSMatrix`	Method in class `Dacapo.Simulation.Simulation`
`GetIBZKPoints`	Method in class `Dacapo.dacapo.Dacapo`
`GetIBZKPoints`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetIBZKPoints`	Method in class `Dacapo.ll.Dacapo`
`GetIBZKPointWeights`	Method in class `Dacapo.dacapo.Dacapo`
`GetIBZKPointWeights`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetIBZKPointWeights`	Method in class `Dacapo.ll.Dacapo`
`GetInFile`	Method in class `Dacapo.JobTypes.JobType`
`GetIntegratedDOS`	Method in class `Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`GetIntegratedDOS`	Method in class `Simulations.Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`GetJobType`	Method in class `Dacapo.Simulation.Simulation`
`GetKerkerPreconditioning`	Method in class `Dacapo.dacapo.Dacapo`
`GetLDOS`	Method in class `Dacapo.dacapo.Dacapo`
`GetLDOS`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetLDOS`	Method in class `Dacapo.ll.Dacapo`
`GetListOfAtoms`	Method in class `Dacapo.dacapo.Dacapo`
`GetListOfAtoms`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetListOfAtoms`	Method in class `Dacapo.ll.Dacapo`
`GetListOfWavefunctions`	Method in class `Dacapo.DacapoWannier.DacapoWannier`
`GetMatrixDimension`	Method in class `Dacapo.DacapoWannier.DacapoWannier`
`GetName`	Method in class `Dacapo.NetCDF.Dimension`
`GetName`	Method in class `Dacapo.NetCDF.Entry`
`GetName`	Method in class `Dacapo.NetCDF.EntryWithStaticName`
`GetName`	Method in class `Dacapo.Simulation.Simulation`
`GetName`	Method in class `Simulations.Dacapo.NetCDF.Entry`
`GetName`	Method in class `Simulations.Dacapo.NetCDF.EntryWithStaticName`
`GetNetCDFEntry`	Method in class `Dacapo.dacapo.Dacapo`
`GetNetCDFEntry`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetNetCDFEntry`	Method in class `Dacapo.ll.Dacapo`
`GetNetCDFFile`	Method in class `Dacapo.dacapo.Dacapo`
`GetNumberOfBands`	Method in class `Dacapo.dacapo.Dacapo`
`GetNumberOfBands`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetNumberOfBands`	Method in class `Dacapo.ll.Dacapo`
`GetOccupationNumbers`	Method in class `Dacapo.dacapo.Dacapo`
`GetOccupationNumbers`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetOccupationNumbers`	Method in class `Dacapo.ll.Dacapo`
`GetOccupationStatistics`	Method in class `Dacapo.dacapo.Dacapo`
`GetOutFile`	Method in class `Dacapo.JobTypes.JobType`
`GetPlaneWaveCutoff`	Method in class `Dacapo.dacapo.Dacapo`
`GetPlaneWaveCutoff`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetPlaneWaveCutoff`	Method in class `Dacapo.ll.Dacapo`
`GetPlot`	Method in class `Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`GetPlot`	Method in class `Simulations.Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`GetPotentialEnergy`	Method in class `Dacapo.dacapo.Dacapo`
`GetPotentialEnergy`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetPotentialEnergy`	Method in class `Dacapo.ll.Dacapo`
`GetPseudoPotential`	Method in class `Dacapo.dacapo.Dacapo`
`GetPseudoPotential`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetPseudoPotential`	Method in class `Dacapo.ll.Dacapo`
`GetPseudoPotentials`	Method in class `Dacapo.dacapo.Dacapo`
`GetPseudoPotentials`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetPseudoPotentials`	Method in class `Dacapo.ll.Dacapo`
`GetScratch`	Method in class `Dacapo.JobTypes.JobType`
`GetScratchInFile`	Method in class `Dacapo.JobTypes.JobType`
`GetSize`	Method in class `Dacapo.NetCDF.Dimension`
`GetSpin`	Method in class `Dacapo.MultiCenterProjectedDOS.MultiCenterProjectedDOSTool`
`GetSpinPolarized`	Method in class `Dacapo.dacapo.Dacapo`
`GetSpinPolarized`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetSpinPolarized`	Method in class `Dacapo.ll.Dacapo`
`GetStress`	Method in class `Dacapo.dacapo.Dacapo`
`GetStress`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetStress`	Method in class `Dacapo.ll.Dacapo`
`GetTkManipulator`	Method in class `Dacapo.Simulation.Simulation`
`GetValue`	Method in class `Dacapo.NetCDF.Entry`
`GetValue`	Method in class `Simulations.Dacapo.NetCDF.Entry`
`GetWaveFunction`	Method in class `Dacapo.dacapo.Dacapo`
`GetWavefunction`	Method in class `Dacapo.dacapo.Dacapo`
`GetWavefunction`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetWavefunction`	Method in class `Dacapo.ll.Dacapo`
`GetWavefunctionArray`	Method in class `Dacapo.dacapo.Dacapo`
`GetWavefunctionArray`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetWavefunctionArray`	Method in class `Dacapo.ll.Dacapo`
`GetWavefunctionArrayMethod`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetWavefunctionArrayMethod`	Method in class `Dacapo.ll.Dacapo`
`GetWavefunctionArrays`	Method in class `Dacapo.dacapo.Dacapo`
`GetWavefunctionArrays`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetWavefunctionArrays`	Method in class `Dacapo.ll.Dacapo`
`GetWavefunctions`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetWavefunctions`	Method in class `Dacapo.ll.Dacapo`
`GetwxManipulator`	Method in class `Dacapo.NetCDF.Entry`
`GetwxManipulator`	Method in class `Dacapo.NetCDF.EntryWithStaticName`
`GetwxManipulator`	Method in class `Dacapo.Simulation.Simulation`
`GetwxManipulator`	Method in class `Simulations.Dacapo.NetCDF.Entry`
`GetwxManipulator`	Method in class `Simulations.Dacapo.NetCDF.EntryWithStaticName`
`GetXCEnergies`	Method in class `Dacapo.dacapo.Dacapo`
`GetXCEnergies`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetXCEnergies`	Method in class `Dacapo.ll.Dacapo`
`GetXCFunctional`	Method in class `Dacapo.dacapo.Dacapo`
`GetXCFunctional`	Method in class `Dacapo.dacapo_new.Dacapo`
`GetXCFunctional`	Method in class `Dacapo.ll.Dacapo`
`GetZIBlochMatrix`	Method in class `Dacapo.DacapoWannier.DacapoWannier`
`GetZIBlochMatrix`	Method in class `Dacapo.dacapo.Dacapo`
`GetZIUSBlochMatrix`	Method in class `Dacapo.DacapoWannier.DacapoWannier`
`index`	Method in class `UserList.UserList`
`InitializeZIBlochMatrix`	Method in class `Dacapo.DacapoWannier.DacapoWannier`
`insert`	Method in class `UserList.UserList`
`IOError`	Class in module `exceptions`
`JobType`	Class in module `Dacapo.JobTypes`
`JobTypes`	Module in package `Dacapo`
`JobTypes`	Variable in module `Dacapo.JobTypes`
`ll`	Module in package `Dacapo`
`MultiCenterProjectedDOS`	Module in package `Dacapo`
`MultiCenterProjectedDOS`	Class in module `Dacapo.MultiCenterProjectedDOS`
`MultiCenterProjectedDOSTool`	Class in module `Dacapo.MultiCenterProjectedDOS`
`NameConflict`	Class in module `Dacapo.NetCDF`
`NetCDF`	Module in package `Dacapo`
`Notify`	Method in class `Patterns.ObserverPattern.Subject`
`Parallel`	Variable in module `Dacapo.JobTypes`
`pop`	Method in class `UserList.UserList`
`PseudoPotentials`	Module in package `Dacapo`
`read`	Method in class `Dacapo.MultiCenterProjectedDOS.MultiCenterProjectedDOS`
`ReadAtomProjectedDOS`	Method in class `Dacapo.AtomProjectedDOS.AtomProjectedDOS`
`ReadAtoms`	Method in class `Dacapo.dacapo.Dacapo`
`ReadAtoms`	Method in class `Dacapo.dacapo_new.Dacapo`
`ReadAtoms`	Method in class `Dacapo.ll.Dacapo`
`ReadEFermi`	Method in class `Dacapo.AtomProjectedDOS.AtomProjectedDOS`
`ReadEFermi`	Method in class `Dacapo.MultiCenterProjectedDOS.MultiCenterProjectedDOS`
`ReadFromNetCDFFile`	Method in class `Dacapo.AtomProjectedDOS.AtomProjectedDOS`
`ReadFromNetCDFFile`	Method in class `Dacapo.MultiCenterProjectedDOS.MultiCenterProjectedDOS`
`ReadFromNetCDFFile`	Method in class `Dacapo.NetCDF.Collection`
`ReadFromNetCDFFile`	Method in class `Dacapo.NetCDF.Dimension`
`ReadFromNetCDFFile`	Method in class `Dacapo.NetCDF.Entry`
`ReadFromNetCDFFile`	Method in class `Dacapo.NetCDF.File`
`ReadFromNetCDFFile`	Method in class `Dacapo.NetCDF.SeriesOfEntries`
`ReadFromNetCDFFile`	Method in class `Simulations.Dacapo.NetCDF.Entry`
`ReadListOfAtoms`	Method in class `Dacapo.dacapo.Dacapo`
`ReadListOfAtoms`	Method in class `Dacapo.dacapo_new.Dacapo`
`ReadListOfAtoms`	Method in class `Dacapo.ll.Dacapo`
`ReadZIUSBlochMatrixFromNetCDFFile`	Method in class `Dacapo.DacapoWannier.DacapoWannier`
`RegisterObserver`	Method in class `Patterns.ObserverPattern.Subject`
`Release`	Method in class `Patterns.ObserverPattern.Subject`
`remove`	Method in class `UserList.UserList`
`reprWithName`	Method in class `Dacapo.NetCDF.Entry`
`reprWithName`	Method in class `Dacapo.Simulation.Simulation`
`reprWithName`	Method in class `Simulations.Dacapo.NetCDF.Entry`
`RestartDacapo`	Method in class `Dacapo.Simulation.Simulation`
`reverse`	Method in class `UserList.UserList`
`SaveData`	Method in class `Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`SaveData`	Method in class `Simulations.Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`ScriptNameRoot`	Function in module `Dacapo.Simulation`
`Serial`	Variable in module `Dacapo.JobTypes`
`Series`	Class in module `Dacapo.NetCDF`
`SeriesOfEntries`	Class in module `Dacapo.NetCDF`
`SetAtomsCounter`	Method in class `Dacapo.dacapo.Dacapo`
`SetAtomsCounter`	Method in class `Dacapo.dacapo_new.Dacapo`
`SetAtomsCounter`	Method in class `Dacapo.ll.Dacapo`
`SetAttributes`	Method in class `Dacapo.NetCDF.Entry`
`SetAttributes`	Method in class `Simulations.Dacapo.NetCDF.Entry`
`SetBZKPoints`	Method in class `Dacapo.dacapo.Dacapo`
`SetBZKPoints`	Method in class `Dacapo.dacapo_new.Dacapo`
`SetBZKPoints`	Method in class `Dacapo.ll.Dacapo`
`SetChargeMixing`	Method in class `Dacapo.dacapo.Dacapo`
`SetData`	Method in class `Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`SetData`	Method in class `Simulations.Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`SetDensityArray`	Method in class `Dacapo.dacapo.Dacapo`
`SetDensityCutoff`	Method in class `Dacapo.dacapo.Dacapo`
`SetDimensionNames`	Method in class `Dacapo.NetCDF.Entry`
`SetDimensionNames`	Method in class `Simulations.Dacapo.NetCDF.Entry`
`SetDirections`	Method in class `Dacapo.DacapoWannier.DacapoWannier`
`SetEFermi`	Method in class `Dacapo.AtomProjectedDOS.AtomProjectedDOS`
`SetEFermi`	Method in class `Dacapo.MultiCenterProjectedDOS.MultiCenterProjectedDOS`
`SetEigenvalueSolver`	Method in class `Dacapo.dacapo.Dacapo`
`SetElectronicTemperature`	Method in class `Dacapo.dacapo.Dacapo`
`SetElectrostaticDecoupling`	Method in class `Dacapo.dacapo.Dacapo`
`SetElectrostaticDecoupling`	Method in class `Dacapo.dacapo_new.Dacapo`
`SetElectrostaticDecoupling`	Method in class `Dacapo.ll.Dacapo`
`SetExternalDynamicsOff`	Method in class `Dacapo.ll.Dacapo`
`SetExternalDynamicsOn`	Method in class `Dacapo.dacapo.Dacapo`
`SetExternalDynamicsOn`	Method in class `Dacapo.ll.Dacapo`
`SetFFTIndex`	Method in class `Dacapo.DacapoWannier.DacapoWannier`
`SetGridDimensions`	Method in class `Dacapo.DacapoWannier.DacapoWannier`
`SetIntegratedDOS`	Method in class `Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`SetIntegratedDOS`	Method in class `Simulations.Dacapo.AtomProjectedDOS.AtomProjectedDOSTool`
`SetJobType`	Method in class `Dacapo.Simulation.Simulation`
`SetKerkerPreconditioning`	Method in class `Dacapo.dacapo.Dacapo`
`SetListOfWavefunctions`	Method in class `Dacapo.DacapoWannier.DacapoWannier`
`SetMatrixDimension`	Method in class `Dacapo.DacapoWannier.DacapoWannier`
`SetName`	Method in class `Dacapo.NetCDF.Dimension`
`SetName`	Method in class `Dacapo.NetCDF.Entry`
`SetName`	Method in class `Simulations.Dacapo.NetCDF.Entry`
`SetNetCDFEntry`	Method in class `Dacapo.dacapo.Dacapo`
`SetNetCDFEntry`	Method in class `Dacapo.dacapo_new.Dacapo`
`SetNetCDFEntry`	Method in class `Dacapo.ll.Dacapo`
`SetNetCDFFile`	Method in class `Dacapo.dacapo.Dacapo`
`SetNetCDFFile`	Method in class `Dacapo.dacapo_new.Dacapo`
`SetNetCDFFile`	Method in class `Dacapo.ll.Dacapo`
`SetNumberOfBands`	Method in class `Dacapo.dacapo.Dacapo`
`SetNumberOfBands`	Method in class `Dacapo.dacapo_new.Dacapo`
`SetNumberOfBands`	Method in class `Dacapo.ll.Dacapo`
`SetOccupationStatistics`	Method in class `Dacapo.dacapo.Dacapo`
`SetPlaneWaveCutoff`	Method in class `Dacapo.dacapo.Dacapo`
`SetPlaneWaveCutoff`	Method in class `Dacapo.dacapo_new.Dacapo`
`SetPlaneWaveCutoff`	Method in class `Dacapo.ll.Dacapo`
`SetPseudoPotential`	Method in class `Dacapo.dacapo.Dacapo`
`SetPseudoPotential`	Method in class `Dacapo.dacapo_new.Dacapo`
`SetPseudoPotential`	Method in class `Dacapo.ll.Dacapo`
`SetPseudoPotentials`	Method in class `Dacapo.dacapo.Dacapo`
`SetPseudoPotentials`	Method in class `Dacapo.dacapo_new.Dacapo`
`SetPseudoPotentials`	Method in class `Dacapo.ll.Dacapo`
`SetSize`	Method in class `Dacapo.NetCDF.Dimension`
`SetSpinPolarized`	Method in class `Dacapo.dacapo.Dacapo`
`SetSpinPolarized`	Method in class `Dacapo.dacapo_new.Dacapo`
`SetSpinPolarized`	Method in class `Dacapo.ll.Dacapo`
`SetSymmetryOff`	Method in class `Dacapo.dacapo.Dacapo`
`SetSymmetryOff`	Method in class `Dacapo.dacapo_new.Dacapo`
`SetSymmetryOff`	Method in class `Dacapo.ll.Dacapo`
`SetSymmetryOn`	Method in class `Dacapo.dacapo.Dacapo`
`SetSymmetryOn`	Method in class `Dacapo.dacapo_new.Dacapo`
`SetSymmetryOn`	Method in class `Dacapo.ll.Dacapo`
`SetTxtFile`	Method in class `Dacapo.dacapo.Dacapo`
`SetTxtFile`	Method in class `Dacapo.dacapo_new.Dacapo`
`SetTxtFile`	Method in class `Dacapo.ll.Dacapo`
`SetValue`	Method in class `Dacapo.NetCDF.Entry`
`SetValue`	Method in class `Simulations.Dacapo.NetCDF.Entry`
`SetXCFunctional`	Method in class `Dacapo.dacapo.Dacapo`
`SetXCFunctional`	Method in class `Dacapo.dacapo_new.Dacapo`
`SetXCFunctional`	Method in class `Dacapo.ll.Dacapo`
`SetZIBlochMatrix`	Method in class `Dacapo.DacapoWannier.DacapoWannier`
`Simulation`	Module in package `Dacapo`
`Simulation`	Class in module `Dacapo.Simulation`
`sort`	Method in class `UserList.UserList`
`StandardError`	Class in module `exceptions`
`StartFromCalculator`	Method in class `Dacapo.dacapo_new.Dacapo`
`StartFromCalculator`	Method in class `Dacapo.ll.Dacapo`
`StayAliveOff`	Method in class `Dacapo.dacapo.Dacapo`
`StayAliveOff`	Method in class `Dacapo.dacapo_new.Dacapo`
`StayAliveOn`	Method in class `Dacapo.dacapo.Dacapo`
`StayAliveOn`	Method in class `Dacapo.dacapo_new.Dacapo`
`StopDacapo`	Method in class `Dacapo.dacapo.Dacapo`
`Subject`	Class in module `Patterns.ObserverPattern`
`UnregisterAllObserver`	Method in class `Patterns.ObserverPattern.Subject`
`UnregisterObserver`	Method in class `Patterns.ObserverPattern.Subject`
`Update`	Method in class `Dacapo.Simulation.Simulation`
`Update`	Method in class `Dacapo.dacapo.Dacapo`
`Update`	Method in class `Dacapo.dacapo_new.Dacapo`
`Update`	Method in class `Dacapo.ll.Dacapo`
`UpdateFromNetCDFFile`	Method in class `Dacapo.Simulation.Simulation`
`UserList`	Class in module `UserList`
`WriteAsNetCDFFile`	Method in class `Dacapo.Simulation.Simulation`
`WriteAsNetCDFFile`	Method in class `Dacapo.dacapo.Dacapo`
`WriteAsNetCDFFile`	Method in class `Dacapo.dacapo_new.Dacapo`
`WriteAsNetCDFFile`	Method in class `Dacapo.ll.Dacapo`
`WriteListOfAtoms`	Method in class `Dacapo.dacapo.Dacapo`
`WriteListOfAtoms`	Method in class `Dacapo.dacapo_new.Dacapo`
`WriteListOfAtoms`	Method in class `Dacapo.ll.Dacapo`
`WriteToNetCDFFile`	Method in class `Dacapo.MultiCenterProjectedDOS.MultiCenterProjectedDOS`
`WriteToNetCDFFile`	Method in class `Dacapo.NetCDF.Collection`
`WriteToNetCDFFile`	Method in class `Dacapo.NetCDF.Dimension`
`WriteToNetCDFFile`	Method in class `Dacapo.NetCDF.Entry`
`WriteToNetCDFFile`	Method in class `Dacapo.NetCDF.SeriesOfEntries`
`WriteToNetCDFFile`	Method in class `Simulations.Dacapo.NetCDF.Entry`

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